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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCACTTTGACCTGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgtgtgtgtgggtgtgtgggtgtgtgtatgtatgtgttctgtttgatgctgtgtgtttgataagacagtggcacggcgctatctgtgacggcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO99059
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49458253|gb|BP086166.1|BP086166
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|22067935|gb|BQ817934.1|BQ817934
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|22067311|gb|BQ817465.1|BQ817465
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|15701151|gb|BI725456.1|BI725456
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|49460126|gb|BP088039.1|BP088039
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|49464419|gb|BP092332.1|BP092332
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGACCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|15695760|gb|BI720065.1|BI720065
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|14238220|gb|BG857036.1|BG857036
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|15368425|gb|BI527851.1|BI527851
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|15371234|gb|BI530660.1|BI530660
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|16434243|gb|BI999469.1|BI999469
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
EST: gi|15701413|gb|BI725718.1|BI725718
EST:     TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAG                         GAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC
genomic: TGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgt ... ctcctcacagGAGCTCAAGGCCGAGGCAATGGCCATCGTGGCATCTGCCCGCCCGCTCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCACTTTGACCTGGTGGCAGCCCACCTGGACTCCACCCTGCAAGAGCTGGGGGTTGCGCAGgtgtgtgtgtgtgtgtgggtgtgtgggtgtgtgtatgtatgtgttctgtttgatgctgtgtgtttgataagacagtggcacggcgctatctgtgacggcg

- - - - - -  TGGTGG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatctgt