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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGGCTGTAGACGTCTTCTATGAGCGTATCGTTGCGGATCCGCAGCTCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggcttcgcgcggaattgacgatgcgcgtgtttgccgagcggcaggaggcaggctcaggttggggcttggggcgggaggcagctgcgtggcgcc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO99059
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49458253|gb|BP086166.1|BP086166
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|22067935|gb|BQ817934.1|BQ817934
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|22067311|gb|BQ817465.1|BQ817465
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|15373019|gb|BI532445.1|BI532445
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|15701151|gb|BI725456.1|BI725456
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|49460126|gb|BP088039.1|BP088039
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|49464419|gb|BP092332.1|BP092332
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|10781527|gb|AV638207.1|AV638207
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|49458196|gb|BP086109.1|BP086109
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|15695760|gb|BI720065.1|BI720065
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|22073072|gb|BQ822410.1|BQ822410
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|14238220|gb|BG857036.1|BG857036
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|15368425|gb|BI527851.1|BI527851
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|22076891|gb|BQ825667.1|BQ825667
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|15371234|gb|BI530660.1|BI530660
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|16434243|gb|BI999469.1|BI999469
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
EST: gi|49459798|gb|BP087711.1|BP087711
EST:     TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAG                         GTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC
genomic: TCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggc ... gttcccccagGTCGCCTTTATGACTTACGTGTTCGGCGGCTCGGGCGCCTACGAGGGTCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAAAGGCTGTAGACGTCTTCTATGAGCGTATCGTTGCGGATCCGCAGCTCGCGCCCTTCTTCGCCAACGTTGACATGAAGAAGCAGCGCCGCAAACAGgtgagctggcttcgcgcggaattgacgatgcgcgtgtttgccgagcggcaggaggcaggctcaggttggggcttggggcgggaggcagctgcgtggcgcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgg