1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTGGGGCGGGCGTGCCAGAAGGGTAACGGCGCGAAAGCAGTCCAGgtgggtgtcaaaggcccttgcgcttcgcagacaacttcatatcaaatgcatgcactgagcccatgctttggcaggggacatgctacacgggttccgaagt...
species | Chlamydomonas reinhardtii |
transcript | EDO98535 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATGCTGGGGCGGGCGTGCCAGAAGGGTAACGGCGCGAAAGCAGTCCAG AAAGTACTAGGCGGTGGEST: gi|9210776|gb|BE337691.1|BE337691
genomic: AGATGCTGGGGCGGGCGTGCCAGAAGGGTAACGGCGCGAAAGCAGTCCAGgtgggtgtca ... atgcgtgcagAAAGTACTAGGCGGTGG
EST: AGATGCTGGGGCGGGCGTGCCAGAAAGGTAACGGCGCGAAAGCAGTCCAG AAAGTACTAGGCGGTGEST: gi|10126241|gb|BE724945.1|BE724945
genomic: AGATGCTGGGGCGGGCGTGCCAGAAGGGTAACGGCGCGAAAGCAGTCCAGgtgggtgtca ... atgcgtgcagAAAGTACTAGGCGGTG
EST: AGATGCTGGGGCGGGCGTGCCAGAAGGGTAACGGCGCGAAAGCAGTCCAT AAAGTACTATGCGGTGGGGGTGCTGAGCCCGCGCCGGCCAATGAGGAGGCC
genomic: AGATGCTGGGGCGGGCGTGCCAGAAGGGTAACGGCGCGAAAGCAGTCCAGgtgggtgtca ... atgcgtgcagAAAGTACTAGGCGGTGGGGGTGCTGAGCCCGCGCCGGCCAAGGAGGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTGGGGCGGGCGTGCCAGAAGGGTAACGGCGCGAAAGCAGTCCAGgtgggtgtcaaaggcccttgcgcttcgcagacaacttcatatcaaatgcatgcactgagcccatgctttggcaggggacatgctacacgggttccgaagt
- - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc