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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGGATGCCAAGGTAGCGTACCTGAAGAAAATCATCGAGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtgccagggcctggtcatggggccttgcaagggtgatttcatatgcatgtgtgtcatagtctcaagctctttgatattgacacgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98535
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16435221|gb|BM000441.1|BM000441
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAG                         ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
EST: gi|8828636|gb|BE212366.1|BE212366
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAG                         ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
EST: gi|15696441|gb|BI720746.1|BI720746
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAG                         ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
EST: gi|16430082|gb|BI995308.1|BI995308
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAG                         ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
EST: gi|9210776|gb|BE337691.1|BE337691
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAG                         ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
EST: gi|22051689|gb|BQ809785.1|BQ809785
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGTTCGGCCCAACATG                         ATCGTGGTTGGCCT
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCT
EST: gi|10126241|gb|BE724945.1|BE724945
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAG                         ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
EST: gi|15696614|gb|BI720919.1|BI720919
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAG                         ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAGATGCTG
EST: gi|15696896|gb|BI721201.1|BI721201
EST:     AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAG                         ATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATNTTTCTGCAG
genomic: AGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtg ... acacgcgcagATCGTGGCTGGCCTGGAGCCGGAGAACACAAACATCTTTCTGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAAGGATGCCAAGGTAGCGTACCTGAAGAAAATCATCGAGGTGGTCAGCATGGTGCTGGGGGAGCAATGCCCCGCTCGGCCCAACAAGgtgcggcgtgccagggcctggtcatggggccttgcaagggtgatttcatatgcatgtgtgtcatagtctcaagctctttgatattgacacgcgcag

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