Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctatccgacgagaccgctatcatgtaaacatgccacaatgtcacacacgctgcatggccgccccgccccgccccgcaacccgccgcgccccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCTGGGACGTACCTGGCGCACGCCGACACCATCGACTGGCAGTCAATTTCCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98389
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10778887|gb|AV635567.1|AV635567
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|34983947|gb|CF557864.1|CF557864
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|10780816|gb|AV637496.1|AV637496
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGC
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGC
EST: gi|8286740|gb|BE024299.1|BE024299
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22071350|gb|BQ820688.1|BQ820688
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|10776342|gb|AV633022.1|AV633022
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|6541743|gb|AV387527.1|AV387527
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|49460245|gb|BP088158.1|BP088158
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|161791253|gb|FC080944.1|FC080944
EST:     CGGAGGGCGTCAAGGCCGTGATTGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|7616306|gb|AW721746.1|AW721746
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|6546808|gb|AV392592.1|AV392592
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22073520|gb|BQ822858.1|BQ822858
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|7545717|gb|AW676205.1|AW676205
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|14234625|gb|BG853441.1|BG853441
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|6541541|gb|AV387325.1|AV387325
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22065170|gb|BQ816214.1|BQ816214
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|8513918|gb|BE121813.1|BE121813
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22057869|gb|BQ812764.1|BQ812764
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|6546240|gb|AV392024.1|AV392024
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|8514279|gb|BE122174.1|BE122174
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|15695451|gb|BI719756.1|BI719756
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22072351|gb|BQ821689.1|BQ821689
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|14235875|gb|BG854691.1|BG854691
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22066932|gb|BQ817240.1|BQ817240
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|9460147|gb|BE453087.1|BE453087
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|7687685|gb|AW758331.1|AW758331
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|8287665|gb|BE025224.1|BE025224
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|16071894|gb|BI873890.1|BI873890
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|10773480|gb|AV624303.1|AV624303
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|6541335|gb|AV387119.1|AV387119
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|34985647|gb|CF559564.1|CF559564
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|6551879|gb|AV397663.1|AV397663
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|10784242|gb|AV640914.1|AV640914
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|16438563|gb|BM003783.1|BM003783
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|16072796|gb|BI874792.1|BI874792
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|6545425|gb|AV391209.1|AV391209
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22071349|gb|BQ820687.1|BQ820687
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|8932985|gb|BE227746.1|BE227746
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|10768853|gb|AV619678.1|AV619678
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|49458245|gb|BP086158.1|BP086158
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22071273|gb|BQ820611.1|BQ820611
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTACATGT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGT
EST: gi|10126847|gb|BE725551.1|BE725551
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTT
EST: gi|49459996|gb|BP087909.1|BP087909
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|49464947|gb|BP092860.1|BP092860
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|22071401|gb|BQ820739.1|BQ820739
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCG
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCG
EST: gi|14231702|gb|BG850518.1|BG850518
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|15694528|gb|BI718833.1|BI718833
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|49460802|gb|BP088715.1|BP088715
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|14231703|gb|BG850519.1|BG850519
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
EST: gi|10778351|gb|AV635031.1|AV635031
EST:     CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAG                         GGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT
genomic: CGGAGGGCGTCAAGGCCGTGATCGCCAAGTCGCACGAGATCCACGGCCAGgtgtgtgcgc ... cccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacgctgcatggccgccccgccccgccccgcaacccgccgcgccccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCTGGGACGTACCTGGCGCACGCCGACACCATCGACTGGCAGTCAATTTCCA
                                            ccccacccc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acctatccgacgagaccgctatcatgtaaacatgccacaatgtcacacacgctgcatggccgccccgccccgccccgcaacccgccgcgccccaccccagGGTCGCTCCATGTGGTTCTGCCTTAGCGGCGCCGGCAAGCGCGGCTTCGCTGGGACGTACCTGGCGCACGCCGACACCATCGACTGGCAGTCAATTTCCA

- - - - - - - - - - - - -gtaaaca
- - - - - - - - - - - - - - - - - ccacaat
- - - - - - - - - - - - - - - - - - - - - - acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaccc