Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGCAAGCAGTCTGCACGCGTGCTCGCGCTGTTAGCGGCCCCGCCCCCGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcggggtttgacaggacaatggtgtcgggggaggaagcacgacacgtgcggcgaacgcggagtggtcttggtcgtgcacgcattgcacaaagcgac...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98389
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10778887|gb|AV635567.1|AV635567
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|34983947|gb|CF557864.1|CF557864
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|10780816|gb|AV637496.1|AV637496
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|8286740|gb|BE024299.1|BE024299
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22071350|gb|BQ820688.1|BQ820688
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|10776342|gb|AV633022.1|AV633022
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|6541743|gb|AV387527.1|AV387527
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|49460245|gb|BP088158.1|BP088158
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|161791253|gb|FC080944.1|FC080944
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAACTCCCGACGAAGGCACCCCTGCCAA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|7616306|gb|AW721746.1|AW721746
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|6546808|gb|AV392592.1|AV392592
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22073520|gb|BQ822858.1|BQ822858
EST:     CGTTATGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|7545717|gb|AW676205.1|AW676205
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|14234625|gb|BG853441.1|BG853441
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|6541541|gb|AV387325.1|AV387325
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22065170|gb|BQ816214.1|BQ816214
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|8513918|gb|BE121813.1|BE121813
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22057869|gb|BQ812764.1|BQ812764
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|6546240|gb|AV392024.1|AV392024
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|8514279|gb|BE122174.1|BE122174
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGGTGGGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|15695451|gb|BI719756.1|BI719756
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22072351|gb|BQ821689.1|BQ821689
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|14235875|gb|BG854691.1|BG854691
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCCCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22066932|gb|BQ817240.1|BQ817240
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|9460147|gb|BE453087.1|BE453087
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|7687685|gb|AW758331.1|AW758331
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|8287665|gb|BE025224.1|BE025224
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|16071894|gb|BI873890.1|BI873890
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|10773480|gb|AV624303.1|AV624303
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|6541335|gb|AV387119.1|AV387119
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|34985647|gb|CF559564.1|CF559564
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|6551879|gb|AV397663.1|AV397663
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|10784242|gb|AV640914.1|AV640914
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|16438563|gb|BM003783.1|BM003783
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|16072796|gb|BI874792.1|BI874792
EST:     GTCAAGCGTACTAGCAGCCAGCTGGTTGTGGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: GTCAAGCGTACTAGCAGCCAGCTGGTTGT-GCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|6545425|gb|AV391209.1|AV391209
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22071349|gb|BQ820687.1|BQ820687
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|8932985|gb|BE227746.1|BE227746
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|10768853|gb|AV619678.1|AV619678
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|49458245|gb|BP086158.1|BP086158
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22071273|gb|BQ820611.1|BQ820611
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCAGACGAAGGCACCCCTGCCT
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCC-GACGAAGGCACCCCTGCCT
EST: gi|10126847|gb|BE725551.1|BE725551
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|49459996|gb|BP087909.1|BP087909
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|49464947|gb|BP092860.1|BP092860
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|22071401|gb|BQ820739.1|BQ820739
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|14231702|gb|BG850518.1|BG850518
EST:     TCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCNAGGCNGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCT
genomic: TCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGC-AGGC-GGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCT
EST: gi|15694528|gb|BI718833.1|BI718833
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|49460802|gb|BP088715.1|BP088715
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|14231703|gb|BG850519.1|BG850519
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
EST: gi|10778351|gb|AV635031.1|AV635031
EST:     CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGG                         AGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA
genomic: CGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcgggg ... ctgtgcgcagAGGCTTCGTCCTCGACCTCGTTCAAGCTCCCGACGAAGGCACCCCTGCCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAATGCAAGCAGTCTGCACGCGTGCTCGCGCTGTTAGCGGCCCCGCCCCCGTCAAGCGTACTAGCAGCCAGCTGGTTGTGCGCGCGCAGGCGGTGTCGGgtaagcggggtttgacaggacaatggtgtcgggggaggaagcacgacacgtgcggcgaacgcggagtggtcttggtcgtgcacgcattgcacaaagcgac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaag