1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgcgcctgcccctaccccgtcggtaacaatcgctgttcccccaagattgcctaccgtctaccattttctgcgctaatcatgaatgtaacatccccacagAACGACTCGCTGTCCACGCTGCTGGCGCGGCTGGAGGGCATTCTGGGCCCCGTGCCCGAGTGGATGCTGCACAAGGGCCGCTACGCGCACCGCTTCTACA
species | Chlamydomonas reinhardtii |
transcript | EDO98379 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTGGGCTGCATCCTGGCGGAGCTGTCCAGCAGCTTTGTTCTTTTCCAG AACGACTCGCTGTCCACGCTGCTGGCGCGGCTGGAGGGCATTCTGGGCCCCEST: gi|16432194|gb|BI997420.1|BI997420
genomic: CTCTGGGCTGCATCCTGGCGGAGCTGTCCAGCAGCTTTGTTCTTTTCCAGgtgcgtgcgg ... atccccacagAACGACTCGCTGTCCACGCTGCTGGCGCGGCTGGAGGGCATTCTGGGCCCC
EST: CTCTGGGCTGCATCCTGGCGGAGCTGTCCAGCAGCTTTGTTCTTTTCCAG AACGACTCGCTGTCCACGCTGCTGGCGCGGCTGGAGGGCATTCTGGGCCCC
genomic: CTCTGGGCTGCATCCTGGCGGAGCTGTCCAGCAGCTTTGTTCTTTTCCAGgtgcgtgcgg ... atccccacagAACGACTCGCTGTCCACGCTGCTGGCGCGGCTGGAGGGCATTCTGGGCCCC
gattgcctaccgtctaccattttctgcgctaatcatgaatgtaacatccccacagAACGACTCGCTGTCCACGCTGCTGGCGCGGCTGGAGGGCATTCTGGGCCCCGTGCCCGAGTGGATGCTGCACAAGGGCCGCTACGCGCACCGCTTCTACA
atgtaac putative branch site (score: 3)
catcccc CT-rich tract
attttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcctgcccctaccccgtcggtaacaatcgctgttcccccaagattgcctaccgtctaccattttctgcgctaatcatgaatgtaacatccccacagAACGACTCGCTGTCCACGCTGCTGGCGCGGCTGGAGGGCATTCTGGGCCCCGTGCCCGAGTGGATGCTGCACAAGGGCCGCTACGCGCACCGCTTCTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - -aacaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt