1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCGCGCGGCAGGCGCTGCGCTCGCTGGCGTTCCTACACTCGCTGGGGCTGATCCACTCCGACCTCAAGCCCGAGAACATACTCATCAAGAGCTACAGCAGgtgggcggctgggaaaagggcagggcggggcatggtgtgtccgagcccaacgggtgcagtcggcttgaccaccacatcaatgtgggttgggagttgtcagggttgtagagaggcggggtgggcacgggtgtgctaggtgatgtccgcttcaggcttgctgataccgccgcacaccgcctggccgcgccgcag
species | Chlamydomonas reinhardtii |
transcript | EDO98379 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCCACTCCGACCTCAAGCCCGAGAACATACTCATCAAGAGCTACAGCAG GTGTGAGGTCAAGGTGATTGACCTGGGCTCCTCCTGCTTCATCACGGACCAEST: gi|49462266|gb|BP090179.1|BP090179
genomic: ATCCACTCCGACCTCAAGCCCGAGAACATACTCATCAAGAGCTACAGCAGgtgggcggct ... cgcgccgcagGTGTGAGGTCAAGGTGATTGACCTGGGCTCCTCCTGCTTCATCACGGACCA
EST: ATCCACTCCGACCTCAAGCCCGAGAACATACTCATCAAGAGCTACAGCAG GTGTGAGGTCAAGEST: gi|16432194|gb|BI997420.1|BI997420
genomic: ATCCACTCCGACCTCAAGCCCGAGAACATACTCATCAAGAGCTACAGCAGgtgggcggct ... cgcgccgcagGTGTGAGGTCAAG
EST: TCCACTCCGACCTCAAGCTCCGAGAACATACTCATCAAGAGCTACAGCAG GTGTGAGGTCAAGGTGATTGACCTGGGCTCCTCCTGCTTCATCACGGACCA
genomic: TCCACTCCGACCTCAAGC-CCGAGAACATACTCATCAAGAGCTACAGCAGgtgggcggct ... cgcgccgcagGTGTGAGGTCAAGGTGATTGACCTGGGCTCCTCCTGCTTCATCACGGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCGCGGCAGGCGCTGCGCTCGCTGGCGTTCCTACACTCGCTGGGGCTGATCCACTCCGACCTCAAGCCCGAGAACATACTCATCAAGAGCTACAGCAGgtgggcggctgggaaaagggcagggcggggcatggtgtgtccgagcccaacgggtgcagtcggcttgaccaccacatcaatgtgggttgggagttgtcagggttgtagagaggcggggtgggcacgggtgtgctaggtgatgtccgcttcaggcttgctgataccgccgcacaccgcctggccgcgccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT