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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggattatggctccagcagttgtggggttgggagttggggcgcggggcgggagtttccgggcgtggaagggtttccgccgtatcgactgacagccctgtacaggtacttgcactggtgggggaaggacacatgtgttaggtgccgggcctgatgtggctttctttgtgcgctgcagACGCGAACTACCAGTGGGGAGGGCATCACTGGACGCAGACCACGTGGAACAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98171
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16438065|gb|BM003285.1|BM003285
EST:     GGACCACTGCTTTAATGCGCCGCAAGAGCGTGTAAAGTACAAGGGCAAGG                         ACGCGAACTACCAGTGGGGAGGGCATCACTGGACGCAGACCACGTGGAACA
genomic: GGACCACTGCTTTAATGCGCCGCAAGAGCGTGTAAAGTACAAGGGCAAGGgtgaggatta ... tgcgctgcagACGCGAACTACCAGTGGGGAGGGCATCACTGGACGCAGACCACGTGGAACA
EST: gi|10789987|gb|AV627353.1|AV627353
EST:     GGACCACTGCTTTAATGCGCCGCAAGAGCGTGTAAAGTACAAGGGCAAGG                         ACGCGAACTACCAGTGGGGAGGGCA
genomic: GGACCACTGCTTTAATGCGCCGCAAGAGCGTGTAAAGTACAAGGGCAAGGgtgaggatta ... tgcgctgcagACGCGAACTACCAGTGGGGAGGGCA
EST: gi|23365458|gb|BU653278.1|BU653278
EST:     GGACCACTGCTTTAATGCGCCGCAAGAGCGTGTAAAGTACAAGGGCAAGG                         ACGCGAACTACCAGTGGGGAGGGCATCACTGGACGCAGACCACGTGGAACA
genomic: GGACCACTGCTTTAATGCGCCGCAAGAGCGTGTAAAGTACAAGGGCAAGGgtgaggatta ... tgcgctgcagACGCGAACTACCAGTGGGGAGGGCATCACTGGACGCAGACCACGTGGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaggacacatgtgttaggtgccgggcctgatgtggctttctttgtgcgctgcagACGCGAACTACCAGTGGGGAGGGCATCACTGGACGCAGACCACGTGGAACAAG
                         gcctgat  putative branch site (score: 4)
                                    ctttctttgt  putative PPT
                                     tttcttt  TA-rich tract