1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caattcgcccaagctttcggctcgctccttcatcacctgcaattcttagttgcatgagaatgtgcaaacataaacaagtaaaataaatacttgcatgcagATCGCGTTCGCGGACAAAGTTCTTCTCAACAAGACGGACCTGGTCAGCGCCGAGGAGCTGCACCGGCTGCGCCACCGCATTCAG
species | Chlamydomonas reinhardtii |
transcript | EDO97913 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
ttagttgcatgagaatgtgcaaacataaacaagtaaaataaatacttgcatgcagATCGCGTTCGCGGACAAAGTTCTTCTCAACAAGACGGACCTGGTCAGCGCCGAGGAGCTGCACCGGCTGCGCCACCGCATTCAG
aaacataaacaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattcgcccaagctttcggctcgctccttcatcacctgcaattcttagttgcatgagaatgtgcaaacataaacaagtaaaataaatacttgcatgcagATCGCGTTCGCGGACAAAGTTCTTCTCAACAAGACGGACCTGGTCAGCGCCGAGGAGCTGCACCGGCTGCGCCACCGCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - acctgca
- - - - - - - - - - - - - - - - - - - - - - - - -ttgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa