1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agaattggggtggtgtgatggttggtgtgcacgagtcacccgcaaacaaacaatttggtcctatcccccacctcctgcctcgcttccccgctgcctgcagGCACGTGTTCCAGGGCGTGCACATGCTGCTGCAGTTCTCCAGCTCAGCGGAGGGCGTGGGGCGGCCGTGGCGCGAGGGCGAGAAGCGCCTCAGCAAG
species | Chlamydomonas reinhardtii |
transcript | EDO97913 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
acaaacaatttggtcctatcccccacctcctgcctcgcttccccgctgcctgcagGCACGTGTTCCAGGGCGTGCACATGCTGCTGCAGTTCTCCAGCTCAGCGGAGGGCGTGGGGCGGCCGTGGCGCGAGGGCGAGAAGCGCCTCAGCAAG
tcctatcccccacctc CT-rich tract
aattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaattggggtggtgtgatggttggtgtgcacgagtcacccgcaaacaaacaatttggtcctatcccccacctcctgcctcgcttccccgctgcctgcagGCACGTGTTCCAGGGCGTGCACATGCTGCTGCAGTTCTCCAGCTCAGCGGAGGGCGTGGGGCGGCCGTGGCGCGAGGGCGAGAAGCGCCTCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - tggtgtg
- - - - - - - - - - -ttggtgt
- - - - - - - - - - - - - - - - - - -acccgca
- - - - - - - - - - - - - - - - - - - - - - -acaaaca