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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagccgcataattggcacttgacgaaggcacgtcgtgcggaaatgtgtctggctcacatgaactctgagctttgcccgtttcccgcacccgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGACGACCACGCCAGCCACATG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97276
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22049326|gb|BQ808732.1|BQ808732
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|23364367|gb|BU652187.1|BU652187
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22050615|gb|BQ809285.1|BQ809285
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|10127405|gb|BE726109.1|BE726109
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22049327|gb|BQ808733.1|BQ808733
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22069472|gb|BQ819049.1|BQ819049
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|16437911|gb|BM003131.1|BM003131
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|10191325|gb|BE761401.1|BE761401
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22050618|gb|BQ809286.1|BQ809286
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22074578|gb|BQ823526.1|BQ823526
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|161806580|gb|FC088126.1|FC088126
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22065539|gb|BQ816408.1|BQ816408
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22051013|gb|BQ809455.1|BQ809455
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATTGATG
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCAT-GATG
EST: gi|10127015|gb|BE725719.1|BE725719
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|10769312|gb|AV620137.1|AV620137
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|10773438|gb|AV624261.1|AV624261
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22050482|gb|BQ809241.1|BQ809241
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|15368211|gb|BI527637.1|BI527637
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|10770323|gb|AV621148.1|AV621148
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|8287504|gb|BE025063.1|BE025063
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|23362120|gb|BU649940.1|BU649940
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|22050481|gb|BQ809240.1|BQ809240
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|14237064|gb|BG855880.1|BG855880
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|8287505|gb|BE025064.1|BE025064
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|49464732|gb|BP092645.1|BP092645
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|161805508|gb|FC093372.1|FC093372
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|161801414|gb|FC091212.1|FC091212
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|23358954|gb|BU646774.1|BU646774
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|14240121|gb|BG858937.1|BG858937
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|161810428|gb|FC099389.1|FC099389
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|49463392|gb|BP091305.1|BP091305
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|10775132|gb|AV625955.1|AV625955
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|15372627|gb|BI532053.1|BI532053
EST:     AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
EST: gi|10127013|gb|BE725717.1|BE725717
EST:     AAGTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACG                         GTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA
genomic: AACTGGCTGCGTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGgtgagttcgg ... cgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtctggctcacatgaactctgagctttgcccgtttcccgcacccgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGACGACCACGCCAGCCACATG
      ggctcac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttagccgcataattggcacttgacgaaggcacgtcgtgcggaaatgtgtctggctcacatgaactctgagctttgcccgtttcccgcacccgccacgcagGTCGCTGTCTGAGATTAGTGACTTCAACATGAGCGATGAGGATCATGATGACGACCACGCCAGCCACATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- agccgca
- - - - - - - - - - - - -aaggcac
- - - - - - - - - - - - - - - - - - - - - - tgtgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgaa