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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgacaggcgggcaggcaggcgggcaggcagggtattggggccgaagggcttgggcagggcgcgtgcacggtcgcgtcacggctgggtggactgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97274
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14233440|gb|BG852256.1|BG852256
EST:     TGTTTTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
genomic: TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|16429696|gb|BI994922.1|BI994922
EST:     TGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
genomic: TGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|14233441|gb|BG852257.1|BG852257
EST:     TGTTTTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
genomic: TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|22074645|gb|BQ823556.1|BQ823556
EST:     TGTTTTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
genomic: TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|23363567|gb|BU651387.1|BU651387
EST:     TGTTATTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATGGTGACCGCGCCGGACTCCACCGCC
genomic: TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|15703538|gb|BI727843.1|BI727843
EST:     GCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
genomic: GCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|12251850|gb|BF861713.1|BF861713
EST:     TGTTTTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGGCCGACTCCACCGCC
genomic: TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|16436063|gb|BM001283.1|BM001283
EST:     TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
genomic: TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|22057037|gb|BQ812478.1|BQ812478
EST:     ATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
genomic: ATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|14236265|gb|BG855081.1|BG855081
EST:     TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGGCCGACTCCACCGCC
genomic: TGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
EST: gi|15369966|gb|BI529392.1|BI529392
EST:     TGAACGGCCAG                         CTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC
genomic: TGAACGGCCAGgtgcggcgac ... gcctccccagCTGGCGCTGGACGCCGAGGGCTACATCGTGACCGCGCCCGACTCCACCGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAGgtgcggcgacaggcgggcaggcaggcgggcaggcagggtattggggccgaagggcttgggcagggcgcgtgcacggtcgcgtcacggctgggtggactgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgggt