1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cacacaccacacacaccgcacacacaccgcacacacacacacacacacgcacgcacgcacgcacgcacacacacacacatacacgcatgcacacccacagGTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG
species | Chlamydomonas reinhardtii |
transcript | EDO97274 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGAGGAGGCGTACGGCAACGAGAAGGGGCTGCTGGGGGGTGTCAAG GTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTGEST: gi|14233441|gb|BG852257.1|BG852257
genomic: TGGTGGAGGAGGCGTACGGCAACGAGAAGGGGCTGCTGGGGGGTGTCAAGgtgcgtgtgt ... acacccacagGTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTG
EST: TGGTGGAGGAGGCGTACGGCAACGAGAAGGGGCTGCTGGGGGGTGTCAAG GTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTGEST: gi|22074645|gb|BQ823556.1|BQ823556
genomic: TGGTGGAGGAGGCGTACGGCAACGAGAAGGGGCTGCTGGGGGGTGTCAAGgtgcgtgtgt ... acacccacagGTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTG
EST: AGGGGCTGCTGGGGGGTGTCAAG GTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTGEST: gi|12251850|gb|BF861713.1|BF861713
genomic: AGGGGCTGCTGGGGGGTGTCAAGgtgcgtgtgt ... acacccacagGTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTG
EST: TGGGGGGTGTCAAG GTCAAGCACGTGGTG-CGGGCGAGCTGCCCGACCTGCCGGTGTCGGGGCTGEST: gi|14236265|gb|BG855081.1|BG855081
genomic: TGGGGGGTGTCAAGgtgcgtgtgt ... acacccacagGTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTG
EST: AGGCGTACGGCAACGAGAAGGGGCTGCTGGGGGGTGTCAAG GTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTG
genomic: AGGCGTACGGCAACGAGAAGGGGCTGCTGGGGGGTGTCAAGgtgcgtgtgt ... acacccacagGTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacaccacacacaccgcacacacaccgcacacacacacacacacacgcacgcacgcacgcacgcacacacacacacatacacgcatgcacacccacagGTCAAGGACGTGGTGACGGGCGAGCTGCACGACCTGCCGGTGTCGGGGCTGTTCTTCGCCATCGGCCACCAGCCCGCCACGGCCTTCCTGAACGGCCAG
-acacacc
- - - - acacaca
- - - - - - - - -gcacaca
- - - - - - - - - - - - - - - - - - - - - - acacgca
- - - - - - - - - - - - - - - - - - - - - - -cacgcac