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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcatgctcctgagcaatgggcacatgtagacacacggtgttttcctgagcctagatatgcttccttgccttataagccgctcaccccacgaaccccacgccccgtccctaccttccccgcacagCTATGGCGAGGTGGTGTGGGAGCCCCCCACCAGCGGCCTGACCCAGTTCGTCACCGTCACGCCCAGTTGCTCATG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97257
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22060344|gb|BQ813745.1|BQ813745
EST:     CCGAACCTGGATGGCAAGGGCGGTTGGGCGGTGCGCCTTGAGAACTGCAG                         CTATGGCGAGGTGGTGTGGGAGCCCCCCACCAGCGGCCTGACCCAGTTCGT
genomic: CCGAACCTGGATGGCAAGGGCGGTTGGGCGGTGCGCCTTGAGAACTGCAGgtgcgtgcat ... ccccgcacagCTATGGCGAGGTGGTGTGGGAGCCCCCCACCAGCGGCCTGACCCAGTTCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataagccgctcaccccacgaaccccacgccccgtccctaccttccccgcacagCTATGGCGAGGTGGTGTGGGAGCCCCCCACCAGCGGCCTGACCCAGTTCGTCACCGTCACGCCCAGTTGCTCATG
        cgctcac  putative branch site (score: 3)
                            cgccccgtccctacct  putative PPT