1 5' 3' | 2 5' 3' | 3 5' 3' |
...acctccgcactcacctgtccggtcccccacctcgcctccccgccacctcacctcgccctcccgcctcccctacccccttgtcgcctcccacacccgccagGCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGGGATGGAAGTAC
species | Chlamydomonas reinhardtii |
transcript | EDO97250 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGG GCCTGCACGTGGTGTGTGACGTGTACTEST: gi|10789906|gb|AV627271.1|AV627271
genomic: CGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGGgtgagcgggg ... cacccgccagGCCTGCACGTGGTGTGTGACGTGTACT
EST: CGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGG GCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGGEST: gi|10782366|gb|AV639046.1|AV639046
genomic: CGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGGgtgagcgggg ... cacccgccagGCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGG
EST: CGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGG GCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGGEST: gi|10786838|gb|AV643510.1|AV643510
genomic: CGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGGgtgagcgggg ... cacccgccagGCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGG
EST: CGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGG GCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGG
genomic: CGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGGgtgagcgggg ... cacccgccagGCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGG
cctcacctcgccctcccgcctcccctacccccttgtcgcctcccacacccgccagGCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGGGATGGAAGTAC
acctcac putative branch site (score: 3)
ccctcccgcctcccct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctccgcactcacctgtccggtcccccacctcgcctccccgccacctcacctcgccctcccgcctcccctacccccttgtcgcctcccacacccgccagGCCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGGGATGGAAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - -cactcac
- - - - - - - - - - - -cccccac