1 5' 3' | 2 5' 3' | 3 5' 3' |
...tggtgcggttactacgccgtcgcgcgcagcaacgttccccgcggcttcggcccagcccccatccgcatcaacctattcccgcacccctcgacccccgcagCCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGG
species | Chlamydomonas reinhardtii |
transcript | EDO97250 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAAGATGTGCCACTGCAACCTGGCGTCCGCCACAGAGCTCGTTTCACG CCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAAEST: gi|10782366|gb|AV639046.1|AV639046
genomic: TGCAAGATGTGCCACTGCAACCTGGCGTCCGCCACAGAGCTCGTTTCACGgtaattgcaa ... acccccgcagCCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAA
EST: TGCAAGATGTGCCACTGCAACCTGGCGTCCGCCACAGAGCTCGTTTCACG CCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAAEST: gi|10786838|gb|AV643510.1|AV643510
genomic: TGCAAGATGTGCCACTGCAACCTGGCGTCCGCCACAGAGCTCGTTTCACGgtaattgcaa ... acccccgcagCCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAA
EST: TGCAAGATGTGCCACTGCAACCTGGCGTCCGCCACAGAGCTCGTTTCACG CCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAA
genomic: TGCAAGATGTGCCACTGCAACCTGGCGTCCGCCACAGAGCTCGTTTCACGgtaattgcaa ... acccccgcagCCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAA
ttcggcccagcccccatccgcatcaacctattcccgcacccctcgacccccgcagCCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGG
cccccgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgcggttactacgccgtcgcgcgcagcaacgttccccgcggcttcggcccagcccccatccgcatcaacctattcccgcacccctcgacccccgcagCCAGTTTCATTCCAAGCACGGGCGGGCGTACCTGTTCAACACCGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - cagcaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaac