1 5' 3' |
CAGCGAGCACGCGGGGCGGCAACCGGGGCAGGTGGACGCCAGCGGCGTGACCATGGCCATCCAGTCCCGGACGGCGCTCTACGTTCAGCCGCCGCCGCAGgtatgcacgcacgcatcgggcgggcgataggggaggggttggtcgtcattgaaggcagtagccaggtaccctctgtgcgcgcggtggcgcatttcagagc...
species | Chlamydomonas reinhardtii |
transcript | EDO97231 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATGGCCATCCAGTCCCGGACGGC-CTTCTACGTTCAGCCGCCGCCGCAG GAAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACGEST: gi|15704457|gb|BI728762.1|BI728762
genomic: CATGGCCATCCAGTCCCGGACGGCGCT-CTACGTTCAGCCGCCGCCGCAGgtatgcacgc ... aatcccctagGA-GCGTGTGACAGAGCTGGCTCGCCAGGTCAACG
EST: CCATGGCCATCCAGTCCCGGACGGCGCTCTACGTTCAGCCGCCGCCGCAG GAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACGACACGGCACTGCCCGAC
genomic: CCATGGCCATCCAGTCCCGGACGGCGCTCTACGTTCAGCCGCCGCCGCAGgtatgcacgc ... aatcccctagGAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACGACACGGCACTGCCCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCGAGCACGCGGGGCGGCAACCGGGGCAGGTGGACGCCAGCGGCGTGACCATGGCCATCCAGTCCCGGACGGCGCTCTACGTTCAGCCGCCGCCGCAGgtatgcacgcacgcatcgggcgggcgataggggaggggttggtcgtcattgaaggcagtagccaggtaccctctgtgcgcgcggtggcgcatttcagagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcgc