Sequence
atgc intronic sequence ATGC exonic sequence...tgccatccgttacgaccaacccaacccacatcccaacatgccacaaacgccctcctgtgcctcctccatccctccatccatccgcaccgcaatcccctagGAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACGACACGGCACTGCCCGACCTGGTCACCAAGCCCGGCCTGCCGCTGCCGCCCGAGGGCAAGCAGATGA
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDO97231 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22055073|gb|BQ811669.1|BQ811669EST: CATGGCCATCCAGTCCCGGACGGC-CTTCTACGTTCAGCCGCCGCCGCAG GAAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACG
genomic: CATGGCCATCCAGTCCCGGACGGCGCT-CTACGTTCAGCCGCCGCCGCAGgtatgcacgc ... aatcccctagGA-GCGTGTGACAGAGCTGGCTCGCCAGGTCAACG
EST:
gi|15704457|gb|BI728762.1|BI728762EST: CCATGGCCATCCAGTCCCGGACGGCGCTCTACGTTCAGCCGCCGCCGCAG GAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACGACACGGCACTGCCCGAC
genomic: CCATGGCCATCCAGTCCCGGACGGCGCTCTACGTTCAGCCGCCGCCGCAGgtatgcacgc ... aatcccctagGAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACGACACGGCACTGCCCGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacgccctcctgtgcctcctccatccctccatccatccgcaccgcaatcccctagGAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACGACACGGCACTGCCCGACCTGGTCACCAAGCCCGGCCTGCCGCTGCCGCCCGAGGGCAAGCAGATGA
tcccct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgccatccgttacgaccaacccaacccacatcccaacatgccacaaacgccctcctgtgcctcctccatccctccatccatccgcaccgcaatcccctagGAGCGTGTGACAGAGCTGGCTCGCCAGGTCAACGACACGGCACTGCCCGACCTGGTCACCAAGCCCGGCCTGCCGCTGCCGCCCGAGGGCAAGCAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - caaccca
- - - - - - - - - - - -acccaca
- - - - - - - - - - - - - - - - ccaacat
- - - - - - - - - - - - - - - - - - - - ccacaaa