1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTCGAGACCGCCGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAGgtgagagcgcgatccgggaaagaaggcaggggtgggatcctgggaggtggggtgcgaccccgtgtgcgccgtaatagcagtgcgcagtaagcgcgtgtgt...
species | Chlamydomonas reinhardtii |
transcript | EDO97199 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAG GCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCACEST: gi|22077004|gb|BQ825780.1|BQ825780
genomic: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAGgtgagagcgc ... ccctctgcagGCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCAC
EST: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAG GCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCACEST: gi|22064710|gb|BQ815989.1|BQ815989
genomic: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAGgtgagagcgc ... ccctctgcagGCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCAC
EST: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAG GCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCACEST: gi|22075337|gb|BQ824113.1|BQ824113
genomic: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAGgtgagagcgc ... ccctctgcagGCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCAC
EST: CGCGGACCTCTGGGCTCCTCATACGGTGGCTGACCACAAGCTGGTCACAG GCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCACEST: gi|16435089|gb|BM000309.1|BM000309
genomic: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAGgtgagagcgc ... ccctctgcagGCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCAC
EST: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAG GCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCACEST: gi|22059495|gb|BQ813461.1|BQ813461
genomic: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAGgtgagagcgc ... ccctctgcagGCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCAC
EST: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAG GCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCAC
genomic: CGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAGgtgagagcgc ... ccctctgcagGCCAGAACCCTGCCAGTTCCTCTGCTGTGGCCAAGCTACTTGCGGAGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTCGAGACCGCCGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGCTGGTCACAGgtgagagcgcgatccgggaaagaaggcaggggtgggatcctgggaggtggggtgcgaccccgtgtgcgccgtaatagcagtgcgcagtaagcgcgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcgtgt