1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagggcgggggcggtgggtttgggtgcaaccggcctgagtgaaaccctcatgtctaccggcgcctccccacagtaaaacctctcatgtttcatactcaagagcagcaacaccccggcactgacaactgctcttacccccagGTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTCGAGACCGCCGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGC
species | Chlamydomonas reinhardtii |
transcript | EDO97199 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATGACCGGCTTCTCAGACAAGGAGGAGGTCGCGGCTGGCAAGGACAAG GTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTCEST: gi|22075337|gb|BQ824113.1|BQ824113
genomic: GCATGACCGGCTTCTCAGACAAGGAGGAGGTCGCGGCTGGCAAGGACAAGgtgagggcgg ... ttacccccagGTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTC
EST: AGGTCCCGGCTGGCAAGGACAAG GTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTCEST: gi|16435089|gb|BM000309.1|BM000309
genomic: AGGTCGCGGCTGGCAAGGACAAGgtgagggcgg ... ttacccccagGTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTC
EST: CTCAGACAAGGAGGAGGTCGCGGCTGGCAAGGACAAG GTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTCEST: gi|22059495|gb|BQ813461.1|BQ813461
genomic: CTCAGACAAGGAGGAGGTCGCGGCTGGCAAGGACAAGgtgagggcgg ... ttacccccagGTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTC
EST: GCATGACCGGCTTCTCAGACAAGGAGGAGGTCGCGGCTGGCAAGGACAAG GTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTC
genomic: GCATGACCGGCTTCTCAGACAAGGAGGAGGTCGCGGCTGGCAAGGACAAGgtgagggcgg ... ttacccccagGTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTC
gtttcatactcaagagcagcaacaccccggcactgacaactgctcttacccccagGTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTCGAGACCGCCGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGC
ctgctcttaccccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagggcgggggcggtgggtttgggtgcaaccggcctgagtgaaaccctcatgtctaccggcgcctccccacagtaaaacctctcatgtttcatactcaagagcagcaacaccccggcactgacaactgctcttacccccagGTTGTTCCCTTCCTGCTCGAGTCCAAGCTGCGCGAGCACGGTGCGCTGTTCGAGACCGCCGCGGACCTCTGGGCTCCTCATGCGGTGGCTGACCACAAGC
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