1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ccaccccgctgcgcctgcccccaacccgctgcccacccctccggcctgcccccacccctcccggcctgcccccacccctcccgcacgcacgcccgcacagGCGCCGACCGCAAGTTCTTCCTGCTGGGCGGCAAGGGCGGCGTGGGCAAGACCAGCTGCTCCTCATCGCTGGCG
species | Chlamydomonas reinhardtii |
transcript | EDO97076 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTACTTTGGCAACGTGGTGTGGAAGGATGTGTACGACCAGATGAACCAGG GCGCCGACCGCAAGTTCTTCCTGCTGGGCGGCAAGGGCGGCGTGGGCAAGAEST: gi|49464285|gb|BP092198.1|BP092198
genomic: CTACTTTGGCAACGTGGTGTGGAAGGATGTGTACGACCAGATGAACCAGGgtgggtagat ... gcccgcacagGCGCCGACCGCAAGTTCTTCCTGCTGGGCGGCAAGGGCGGCGTGGGCAAGA
EST: CTACTTTGGCAACGTGGTGTGGAAGGATGTGTACGACCAGATGAACCAGG GCGCCGACCGCAAGTTCTTCCTGCTGGGCGGCAAGGGCGGCGTGGGCAAGA
genomic: CTACTTTGGCAACGTGGTGTGGAAGGATGTGTACGACCAGATGAACCAGGgtgggtagat ... gcccgcacagGCGCCGACCGCAAGTTCTTCCTGCTGGGCGGCAAGGGCGGCGTGGGCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaccccgctgcgcctgcccccaacccgctgcccacccctccggcctgcccccacccctcccggcctgcccccacccctcccgcacgcacgcccgcacagGCGCCGACCGCAAGTTCTTCCTGCTGGGCGGCAAGGGCGGCGTGGGCAAGACCAGCTGCTCCTCATCGCTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - -cccaacc
- - - - - - - - - - - - - - -tgcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgcac