1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGGGCTGTCGCTTGGCCACCAGGCCCTTGGGGCAATTGGCGGAGCTTTTCGACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAGgtaataattcagaatgcaacccgcatggtcaggggcactctcggaaggtacattccgcgaggggaatggggttcgctggctgaagcccggcgagctaacc...
species | Chlamydomonas reinhardtii |
transcript | EDO97071 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAG GCGCTTGTGAAGCTGGACTACCCGGAGAAGCTCCAGAACCTGCTGCTCACCEST: gi|49469993|gb|BP097854.1|BP097854
genomic: GACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAGgtaataattc ... acacttccagGCGCTTGTGAAGCTGGACTACCCGGAGAAGCTCCAGAACCTGCTGCTCACC
EST: GACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAG GCGCTTGTGAAGCTGGACTACCCGGAGAAGCTCCAGAACCTGCTGCTCACCEST: gi|8933066|gb|BE227827.1|BE227827
genomic: GACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAGgtaataattc ... acacttccagGCGCTTGTGAAGCTGGACTACCCGGAGAAGCTCCAGAACCTGCTGCTCACC
EST: GACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAG GCGCTTGTGAAGCTGGACTACCCGGAGAAGCTCCAGAACCTGCTGCTCACCEST: gi|9458319|gb|BE452183.1|BE452183
genomic: GACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAGgtaataattc ... acacttccagGCGCTTGTGAAGCTGGACTACCCGGAGAAGCTCCAGAACCTGCTGCTCACC
EST: GACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAG GCGCTTGTGAAGCTGGACTACCCGGAGAAGCTCCAGAACCTGCTGCTCACC
genomic: GACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAGgtaataattc ... acacttccagGCGCTTGTGAAGCTGGACTACCCGGAGAAGCTCCAGAACCTGCTGCTCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGCTGTCGCTTGGCCACCAGGCCCTTGGGGCAATTGGCGGAGCTTTTCGACGCCACGCCAGCTCGCACGCCGAGAACACGAACACGTTTTTAAGAGAGgtaataattcagaatgcaacccgcatggtcaggggcactctcggaaggtacattccgcgaggggaatggggttcgctggctgaagcccggcgagctaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga