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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggggcggggtcacggggcggggtctaccgaactctcctgctcgaaggcagcccgggactgcagtgctcgtcgtattcttatcttagcccgcgttacgctgcgcctgatgcgctccacagGTTGCGGGCCCGGGGCTGCGGCGCGGGCGCTTCTGTCGCGCGCTGGGTATTGACGAGGTGGGCAGCGGCAAGGCATTGGCCAACCTGCTCAACCGCTACT

Basic information

species Chlamydomonas reinhardtii
transcript EDO97011
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16072095|gb|BI874091.1|BI874091
EST:     AAGGGCTCCAGGCGGACGGGCTGATAGGCGTGTGGAATGACAAAACCAAG                         GTTGCGGGCCCGGGGCTGCGGCGCGGGCGCTTCTGTCGCGCGCTGGGTATT
genomic: AAGGGCTCCAGGCGGACGGGCTGATAGGCGTGTGGAATGACAAAACCAAGgtgggggcgg ... cgctccacagGTTGCGGGCCCGGGGCTGCGGCGCGGGCGCTTCTGTCGCGCGCTGGGTATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcgtcgtattcttatcttagcccgcgttacgctgcgcctgatgcgctccacagGTTGCGGGCCCGGGGCTGCGGCGCGGGCGCTTCTGTCGCGCGCTGGGTATTGACGAGGTGGGCAGCGGCAAGGCATTGGCCAACCTGCTCAACCGCTACT
                                     gcctgat  putative branch site (score: 4)
        tattcttat  TA-rich tract