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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcttcgtgactgccagctgcgttggccacagcgcagtctggtattgcatttgcgcacggcgtggtgctcggcaactggcatgcagctctttgggccatgacctacccgcccgcttcaacgttgcccccaacccccagGCGGCATGAGGCTGGCAATGTCGGTGTGGAGCATGCTGCGCCCGACACCATCCGCACCTGCCTGCGGCGCGCGCGGCCGGGCTTTGGGCCGGGGCGGACG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97011
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16072095|gb|BI874091.1|BI874091
EST:     AGGCACGCATTCTTGCGTGTGGAGCTGGCGACCAGTGAAGCAGAGAGCAG                         GCGGCATGAGGCTGGCAATGTCGGTGTGGAGCATGCTGCGCCCGACACCAT
genomic: AGGCACGCATTCTTGCGTGTGGAGCTGGCGACCAGTGAAGCAGAGAGCAGgtaaggcttc ... caacccccagGCGGCATGAGGCTGGCAATGTCGGTGTGGAGCATGCTGCGCCCGACACCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagctctttgggccatgacctacccgcccgcttcaacgttgcccccaacccccagGCGGCATGAGGCTGGCAATGTCGGTGTGGAGCATGCTGCGCCCGACACCATCCGCACCTGCCTGCGGCGCGCGCGGCCGGGCTTTGGGCCGGGGCGGACG
                                      ttgccccc  CT-rich tract