1 5' 3' | 2 5' 3' | 3 5' 3' |
CAACAAGAGCTGGGGGCGGCGCATGACGGAGAAGGCGGCCAACAAGGCGTTGAAAGAAACCAAGGCGGAGGCGCTGGCGGAAACCAAGGCCAAACGCAAGgtgtggattgtggcgtgtggagggagtgtcccgcgcttggtgtctggtcgccccctgaggggcgccgttgcttgcagcttggagccggaggagcaaccgg...
species | Chlamydomonas reinhardtii |
transcript | EDO96998 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAAAGAAACCAAGGCGGAGGCGCTGGCGGAAACCAAGGCCAAACGCAAG GCTGCCGCGGACCAGCGCAAGGCGGCCAGGGAGCGCAAGCAGGCCAACCAGEST: gi|16436749|gb|BM001969.1|BM001969
genomic: TGAAAGAAACCAAGGCGGAGGCGCTGGCGGAAACCAAGGCCAAACGCAAGgtgtggattg ... ccgtcgacagGCTGCCGCGGACCAGCGCAAGGCGGCCAGGGAGCGCAAGCAGGCCAACCAG
EST: TGAAAGAAACCAAGGCGGAGGCGCTGGCGGAAACCAAGGCCAAACGCAAG GCTGCCGCGGACCAGCGCAAGGCGGCCAGNGAGCGCAAGCAEST: gi|15695824|gb|BI720129.1|BI720129
genomic: TGAAAGAAACCAAGGCGGAGGCGCTGGCGGAAACCAAGGCCAAACGCAAGgtgtggattg ... ccgtcgacagGCTGCCGCGGACCAGCGCAAGGCGGCCAGGGAGCGCAAGCA
EST: TGAAAGAAACCAAGGCGGAGGCGCTGGCGGAAACCAAGGCCAAACGCAAG GCTGCCGCGGACCAGCGCAAGGCGGCCAGGGAGCGCAAGCAGGCCAACCAG
genomic: TGAAAGAAACCAAGGCGGAGGCGCTGGCGGAAACCAAGGCCAAACGCAAGgtgtggattg ... ccgtcgacagGCTGCCGCGGACCAGCGCAAGGCGGCCAGGGAGCGCAAGCAGGCCAACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAAGAGCTGGGGGCGGCGCATGACGGAGAAGGCGGCCAACAAGGCGTTGAAAGAAACCAAGGCGGAGGCGCTGGCGGAAACCAAGGCCAAACGCAAGgtgtggattgtggcgtgtggagggagtgtcccgcgcttggtgtctggtcgccccctgaggggcgccgttgcttgcagcttggagccggaggagcaaccgg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttg