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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctctcgctgcgccgggtacgcacacgccgtcggtagttgtggggtccggcactcatacgcgctgccatgccgctacccttcaacacctgtggcaccctgcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATGAAGGCGAACGCCAGCAGCAACAAGAGCTGGGGGCGGCGCATGACGGAGA

Basic information

species Chlamydomonas reinhardtii
transcript EDO96998
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161815489|gb|FC101045.1|FC101045
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|15695204|gb|BI719509.1|BI719509
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|15372867|gb|BI532293.1|BI532293
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|10776850|gb|AV633530.1|AV633530
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAG
EST: gi|15692591|gb|BI716896.1|BI716896
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|16436749|gb|BM001969.1|BM001969
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|10768186|gb|AV619011.1|AV619011
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|16073477|gb|BI875473.1|BI875473
EST:     TCGCGCACGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|15704179|gb|BI728484.1|BI728484
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|16430816|gb|BI996042.1|BI996042
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
EST: gi|15695824|gb|BI720129.1|BI720129
EST:     TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCG                         GTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG
genomic: TCGCGCAGGCAGGAAAGCGGCAAAAGGCGGACGACAAGACCTGGCGCCCGgtgagctctc ... gcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagctctcgctgcgccgggtacgcacacgccgtcggtagttgtggggtccggcactcatacgcgctgccatgccgctacccttcaacacctgtggcaccctgcacttgtagGTTTCCGGGAAAGTATGGAAGGCGCCGGGGCAACGCGCTAGCAAGGTTATGAAGGCGAACGCCAGCAGCAACAAGAGCTGGGGGCGGCGCATGACGGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT