1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACGTGCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATTgtgagcggcctgggttgggcgattggggcgcatggggctgcccggaaggagccacggctgccatgccatatagtcagtcctaacaaggaacgcatgttaa...
species | Chlamydomonas reinhardtii |
transcript | EDO96957 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATT TTCCACCGAATCATCCGGGACTTCATGTGCCAGEST: gi|16072033|gb|BI874013.1|BI874013
genomic: GCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATTgtgagcggcc ... attgtcgcagTTCCACCGAATCATCCGGGACTTCATGTGCCAG
EST: GCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATT TTCCACCGAATCATCCGGGACTTCATGTGCCAGEST: gi|10777417|gb|AV634097.1|AV634097
genomic: GCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATTgtgagcggcc ... attgtcgcagTTCCACCGAATCATCCGGGACTTCATGTGCCAG
EST: GCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATT TTCCACCGAATCATCCGGGACTTCATGTGCCAGEST: gi|10770871|gb|AV621694.1|AV621694
genomic: GCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATTgtgagcggcc ... attgtcgcagTTCCACCGAATCATCCGGGACTTCATGTGCCAG
EST: GCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATT TTCCACCGAATCATCCGGGACTTCATGTGCCAG
genomic: GCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATTgtgagcggcc ... attgtcgcagTTCCACCGAATCATCCGGGACTTCATGTGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGTGCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATTgtgagcggcctgggttgggcgattggggcgcatggggctgcccggaaggagccacggctgccatgccatatagtcagtcctaacaaggaacgcatgttaa
- - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcatgt