Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtggtgggggttttgcacgtgcttgtgtgcggaggctcgactgcttctgcaaatgctctccatgcccatgacgatgtgcgccctgccgccttctgacccagGATTTTGGAACGCGCATCTACTCAATGACCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96346
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49470552|gb|BP098413.1|BP098413
EST:     ATGGACGGGAGCAAAACGGGAGCGACGCCTTCATAAACGTCACGATCTGG                         GATTTTGGAACGCGCATCTACTCAATGACCAAG
genomic: ATGGACGGGAGCAAAACGGGAGCGACGCCTTCATAAACGTCACGATCTGGgtgagtgtgg ... tctgacccagGATTTTGGAACGCGCATCTACTCAATGACCAAG
EST: gi|10793033|gb|AV630399.1|AV630399
EST:     ATGGACGGGAGCAAAACGGGAGCGACGCCTTCATAAACGTCACGATCTGG                         GATTTTGGAACGCGCATCTACTCAATGACCAAG
genomic: ATGGACGGGAGCAAAACGGGAGCGACGCCTTCATAAACGTCACGATCTGGgtgagtgtgg ... tctgacccagGATTTTGGAACGCGCATCTACTCAATGACCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcaaatgctctccatgcccatgacgatgtgcgccctgccgccttctgacccagGATTTTGGAACGCGCATCTACTCAATGACCAAG
                                            ttctgac  putative branch site (score: 2)
                                  ccctgccgccttct  CT-rich tract