Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15700615|gb|BI724920.1|BI724920EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
EST:
gi|10126112|gb|BE724816.1|BE724816EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGTTNTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATNTA
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
EST:
gi|10777063|gb|AV633743.1|AV633743EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
EST:
gi|10777062|gb|AV633742.1|AV633742EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
EST:
gi|7687888|gb|AW758534.1|AW758534EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGGTTTCACTCCGAATTCGCAATCACACATTTCGAATATCCACTATTT
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATT-CGAATATCCACTATTT
EST:
gi|49461834|gb|BP089747.1|BP089747EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGTTTTCACTC
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTC
EST:
gi|6546703|gb|AV392487.1|AV392487EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
EST:
gi|49459789|gb|BP087702.1|BP087702EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATAT
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATAT
EST:
gi|10771361|gb|AV622184.1|AV622184EST: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATG GGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
genomic: ATGGGATGCGCCGTCCGGTCGCCATAAAGTTATTCCCAACCTCGCAAATGgtatgtccac ... ccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatgtccaccaaagaaggagtaaagcttaacttcacgcgccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTAAGCATGACGTGGAACAAGAACCGATACCATTACCGTCCGCCTCCATTGA
gcttaac putative branch site (score: 3)
ttaactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtccaccaaagaaggagtaaagcttaacttcacgcgccatgttcagGGTGGTTTTCACTCCGAATTCGCAATCACACATTCGAATATCCACTATTTAAGCATGACGTGGAACAAGAACCGATACCATTACCGTCCGCCTCCATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC