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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcggtttcttgatccgtttacattaatcctttctttatgctagatttcggaatttcagtgacataactctgtttcttataaaactttcttttaaattttgttgtttttaag

Basic information

species Arabidopsis thaliana
transcript AT5G66670.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116432014|gb|EG474606.1|EG474606
EST:     AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG                         GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
EST: gi|116432011|gb|EG474603.1|EG474603
EST:     AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG                         GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
EST: gi|116432026|gb|EG474618.1|EG474618
EST:     AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG                         GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
EST: gi|116432023|gb|EG474615.1|EG474615
EST:     AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG                         GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
EST: gi|116432332|gb|EG474924.1|EG474924
EST:     AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG                         GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG