Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116432014|gb|EG474606.1|EG474606EST: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
EST:
gi|116432011|gb|EG474603.1|EG474603EST: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
EST:
gi|116432026|gb|EG474618.1|EG474618EST: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
EST:
gi|116432023|gb|EG474615.1|EG474615EST: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
EST:
gi|116432332|gb|EG474924.1|EG474924EST: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCG GTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
genomic: AATTAGCTCTTCCTGTGTCTTGGATTACAATTTCAAACGTTCCGgtaagtttcg ... tgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtgacataactctgtttcttataaaactttcttttaaattttgttgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCGGAGCTCATAAAAGGACACTCCAGTTCTAACAACAACGGAACTAACGTTT
acataac putative branch site (score: 3)
ttgttttt putative PPT
tttcttataaaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttcggtttcttgatccgtttacattaatcctttctttatgctagatttcggaatttcagtgacataactctgtttcttataaaactttcttttaaattttgttgtttttaagGTCAGATTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCGGAGCTCATAAAAGGACACTCCAGTTCTAACAACAACGGAACTAACGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA