1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATTGCGGTATCCCACGATCGATACTTCATCAAACAAATCGTTAACAGAGTGATAGAAGTAGAAGATGGTTGTTTAGAAGATTATGCAGGCGACTACAATgtacacttcggattgcactctttctacattttttccagtataatatgatctctgtattaacttttggaatgtgtgaatgtctcag
species | Arabidopsis thaliana |
transcript | AT5G64840.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAGAAGTAGAAGATGGTTGTTTAGAAGATTATGCAGGCGACTACAAT TATTACTTGGAGAAGAATCTGGATGCTAGAACAAAGGAGCTAGAGAGAGAAEST: gi|124779671|gb|EH869614.1|EH869614
genomic: ATAGAAGTAGAAGATGGTTGTTTAGAAGATTATGCAGGCGACTACAATgtacacttcg ... aatgtctcagTATTACTTGGAGAAGAATCTGGATGCTAGAACAAAGGAGCTAGAGAGAGAA
EST: ATAGAAGTAGAAGAGTGGTTGTTTAAGAAGATTATGCAGGCGACTACAAT TATTACTTGGAGAAGAATCTGGATGCTAGAACAAAGGAEST: gi|125261777|gb|EL275862.1|EL275862
genomic: ATAGAAGTAGAAGA-TGGTTGTTT-AGAAGATTATGCAGGCGACTACAATgtacacttcg ... aatgtctcagTATTACTTGGAGAAGAATCTGGATGCTAGAACAAAGGA
EST: TTTAGAAGATTATGCAGGCGACTACAAT TATTACTTGGAGAAGAATCTGGATGCTAGAACAAAGGAGCTAGAAGAGAGAEST: gi|124878124|gb|EH957561.1|EH957561
genomic: TTTAGAAGATTATGCAGGCGACTACAATgtacacttcg ... aatgtctcagTATTACTTGGAGAAGAATCTGGATGCTAGAACAAAGGAGCTAGA-GAGAGA
EST: TGATAGAAGTAGAAGATGGTTGTTTAGAAGATTATGCAGGCGACTACAAT TATTACTTGGAGAAGAATCTGGATGCTAGAACAAAGGAG
genomic: TGATAGAAGTAGAAGATGGTTGTTTAGAAGATTATGCAGGCGACTACAATgtacacttcg ... aatgtctcagTATTACTTGGAGAAGAATCTGGATGCTAGAACAAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGCGGTATCCCACGATCGATACTTCATCAAACAAATCGTTAACAGAGTGATAGAAGTAGAAGATGGTTGTTTAGAAGATTATGCAGGCGACTACAATgtacacttcggattgcactctttctacattttttccagtataatatgatctctgtattaacttttggaatgtgtgaatgtctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG