1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTCAGCGGAAGCAGATGAAGATTAGGTTTCCAGAGCGTGGGACAAGTGGAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTTTCGAGGATAAGgtgagttactagagtataactcatgacaatagtataaatccttaatcgctcacgtttgaccctgtgaaaaatgtgtattgttgaaaaagcag
species | Arabidopsis thaliana |
transcript | AT5G64840.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTTTCGAGGATAAG ATGCTATTTAAGAAGGCTAATCTATCEST: gi|125179981|gb|EL197307.1|EL197307
genomic: GAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTTTCGAGGATAAGgtgagttact ... gaaaaagcagATGCTATTTAAGAAGGCTAATCTATC
EST: GAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTTTCGAGGATAAG ATGCTATTTAAGAAGGCTAATCTATCAATAGAAAGAEST: gi|124729062|gb|EH820464.1|EH820464
genomic: GAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTTTCGAGGATAAGgtgagttact ... gaaaaagcagATGCTATTTAAGAAGGCTAATCTATCAATAGAAAGA
EST: GAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTTTCGAGGATAAG ATGCTATTTAAGAAGGCTAATCTATCAATAGAAAGAGGGG
genomic: GAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTTTCGAGGATAAGgtgagttact ... gaaaaagcagATGCTATTTAAGAAGGCTAATCTATCAATAGAAAGAGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCAGCGGAAGCAGATGAAGATTAGGTTTCCAGAGCGTGGGACAAGTGGAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTTTCGAGGATAAGgtgagttactagagtataactcatgacaatagtataaatccttaatcgctcacgtttgaccctgtgaaaaatgtgtattgttgaaaaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT