1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGCTATCCAGGACGATCAGCACGTTCTTCAATCTTCCGGAGTCAGCTCAAGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtctttcgctctttattgtttacatatttgtgagattagaatcggtaagaacatcactgacttacttaagaaacattgcatgtgatattccacaat...
species | Arabidopsis thaliana |
transcript | AT5G64540.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTGEST: gi|116432280|gb|EG474872.1|EG474872
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTGEST: gi|116432276|gb|EG474868.1|EG474868
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAG-ACCTAACCAG GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTGEST: gi|116432286|gb|EG474878.1|EG474878
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTGEST: gi|116432275|gb|EG474867.1|EG474867
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTGEST: gi|116432283|gb|EG474875.1|EG474875
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTGEST: gi|116432296|gb|EG474888.1|EG474888
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG GAAACCGCTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTGEST: gi|116432288|gb|EG474880.1|EG474880
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTGEST: gi|116432290|gb|EG474882.1|EG474882
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTATCCAGGACGATCAGCACGTTCTTCAATCTTCCGGAGTCAGCTCAAGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtctttcgctctttattgtttacatatttgtgagattagaatcggtaagaacatcactgacttacttaagaaacattgcatgtgatattccacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa