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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGATACGGTGTATGATGAAAAACACGTTTGCTTGTACTGATGATGTTTCATCATTAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCgtaggtgccctcaaactactgagtactgactgtatctttgtttcctgttatcgttctggtttagtgttcatgtgcaagaattattactgtttgaacagcctttttagtctctgttttatttgaatcttctctggtttggaattcatagcattctaactccattcccctggcttgtcttggatttttctag

Basic information

species Arabidopsis thaliana
transcript AT5G64200.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125057800|gb|EL126839.1|EL126839
EST:     TAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCC                         TCTGGTTCGAGAAAAGAATTGACTGGGAAGATGG
genomic: TAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCgtaggtgccc ... atttttctagTCTGGTTCGAGAAAAGAATTGACTGGGAAGATGG
EST: gi|116476724|gb|EG519316.1|EG519316
EST:     TCATCATTAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCC                         TCTGGTTCGAGAAAAGAATTAACTGGGAAGATGGCACAACCATGTTGAGAT
genomic: TCATCATTAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCgtaggtgccc ... atttttctagTCTGGTTCGAGAAAAGAATTGACTGGGAAGATGGCACAACCATGTTGAGAT
EST: gi|116476723|gb|EG519315.1|EG519315
EST:     TCATCATTAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCC                         TCTGGTTCGAGAAAAGAATTAACTGGGAAGATGGCACAACCATGTTGAGAT
genomic: TCATCATTAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCgtaggtgccc ... atttttctagTCTGGTTCGAGAAAAGAATTGACTGGGAAGATGGCACAACCATGTTGAGAT