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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGTCGTCGCACTAGGTCTCGTAGTGCCAGCCCAGATGAAAAACGCAGAGTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAGgtttcttccgttgtgaacctctttttttcatgttgttgctccacaatactgtgtatcctgatttcaactttttgacatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G64200.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085148|gb|DR380907.1|DR380907
EST:     GTCAGAGSCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAG                         TGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTC
genomic: GTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAGgtttcttccg ... tgacatgcagTGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTC
EST: gi|86077808|gb|DR373565.1|DR373565
EST:     GTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAG                         TGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTC
genomic: GTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAGgtttcttccg ... tgacatgcagTGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTC
EST: gi|125206412|gb|EL221366.1|EL221366
EST:     GTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAG                         TGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCT
genomic: GTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAGgtttcttccg ... tgacatgcagTGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCT
EST: gi|116476724|gb|EG519316.1|EG519316
EST:     TTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAG                         TGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTC
genomic: TTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAGgtttcttccg ... tgacatgcagTGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTC
EST: gi|116476723|gb|EG519315.1|EG519315
EST:     CAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAG                         TGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTC
genomic: CAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAGgtttcttccg ... tgacatgcagTGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTC