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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCTTGCGGGTCTACATTTGTGAGCATGACACATCTCCCCCAGgtaattcttttcttttttcgttttgttccacgagttgttttcttagagacagtttcttgtagcaatctcataaaacaattccttttcattttctctctgg...

Basic information

species Arabidopsis thaliana
transcript AT5G63460.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164018584|gb|ES060927.1|ES060927
EST:     ATTTGTGAGCATGACACATCTCCCCCAG                         AAGGACAGCTTATCAAAACAAACCAGCAAAATAT
genomic: ATTTGTGAGCATGACACATCTCCCCCAGgtaattcttt ... atatatccagAAGGACAGCTTATCAAAACAAACCAGCAAAATAT
EST: gi|86086211|gb|DR381970.1|DR381970
EST:     GAAGCTTGCGGGTCTACATTTTGTGAGCATGACACATCTCCCCCAG                         AAGGACAGCTTATCAAAACAAACCAGCWAAATATACTAATCAGATCTCTCT
genomic: GAAGCTTGCGGGTCTACA-TTTGTGAGCATGACACATCTCCCCCAGgtaattcttt ... atatatccagAAGGACAGCTTATCAAAACAAACCAGCAAAATATACTAATCAGATCTCTCT