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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttcatatttgcgccttttgttttgtgttggatacttttccttgtttctttagtgtatctaacatcccttgattttatcttttattagtagtttgcttttttcattcatatactcaatttaacagGACGCATATGATGGACTTGTTGATTCACCGGTATCAGACCCGTTGAATGATTACAAAAAGTCAGTAGTTTCCATCATTGACGAATACTTTAGCACCGGGG

Basic information

species Arabidopsis thaliana
transcript AT5G63190.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125284991|gb|EL299076.1|EL299076
EST:     GATCCCAATTACGATAGTGGAGAG                         GACGCATATGATGGACTTGTTGATTCACCGGTATCAGACCCGTTGAA
genomic: GATCCCAATTACGATAGTGGAGAGgtactttcat ... aatttaacagGACGCATATGATGGACTTGTTGATTCACCGGTATCAGACCCGTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttatcttttattagtagtttgcttttttcattcatatactcaatttaacagGACGCATATGATGGACTTGTTGATTCACCGGTATCAGACCCGTTGAATGATTACAAAAAGTCAGTAGTTTCCATCATTGACGAATACTTTAGCACCGGGG
 ccttgat  putative branch site (score: 5)
                          ttttttcattcatata  TA-rich tract