Sequence
atgc intronic sequence ATGC exonic sequenceTCCGATTCCTTATCTTTTCTGTCTTGGCTCGAGATCCGAGCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATTTGATTCCTGCGATCACAGgtatgacaggttagattttgttttgtatagttgtatacatacttctttgtgatgttttgtttacttaatcgaatttttggagtgttttaaggtctctcgt...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G63190.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G63190.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA05G02910.1 (Glycine max), 5'ss of exon 1
------TCCGATT--CCTTATCTTTTCTGTCTTGGCTCGAGATCCGAGCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATTTGATTCCTGCGATCACAGgtatgacaggttagattttgttttgtatagttgtatacatacttctttgtgatgttttgtttacttaatcgaatttttggagtgttttaaggtctctcgt---
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GATTCGTAAAATTTTTCTTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAA------TCCGTTTC-TGATTTGCATTTTG-------TACTCACTGgttcgtattcttcactttttctcttttgcgttttctattttcattttttca---tttgatttggcgatgtgatttattagcatgctgttatattttgtgttga
upper sequence: AT5G63190.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA17G13570.1 (Glycine max), 5'ss of exon 1
--------------TCCGATTCCTTATCTTTTCTGTCTTGGCTCGAGATCCGAGCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATT--TGATTCCTGCGAT-CACAGgtatgacaggttagattttgttttgtatagttgtatacatacttctttgtgatgttttgtttacttaatcgaatttttggagtgttttaaggtctctcgt
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CTTTGATTCGTTAATTTTTTTTCTTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAATCCGATTCTGATTTGCATTTCGTACTCACTGgttcgtattcttcacttttctctctttctcttttgcgttttctattttcattttca-gtttccttat----ttttttccatttgatttggctatgtgatt-tatta-----------
upper sequence: AT5G63190.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv17s0000g09870.t01 (Vitis vinifera), 5'ss of exon 1
------TCCGATTCCTTATCTTTTCTGTCTTGGCTCGAGATCCGAGCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGG--AATTTGATTCCTGCGA----TCACAGgtatgacaggttagattttgttttgtatagttgtatacatacttctttgtgatgttttgtttacttaatcgaatttttggagtgttttaaggtctctcgt
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TGGAGATCCGGT---TTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAATCGGATTAGGGTTTCGGTGCCGCTCACTTCCACTTCATTGAGgtgttctaactctttctatttggatttttttttttttgggtttttgtct-ctcttgtgcgctgtttggtt-gctgagaaaagatagggaaatggaaggagtt-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164231119|gb|ES034251.1|ES034251EST: CCTGCGATCACAG ATGGCATCGGGTGAGGGAATTTTGACGGATGGACAGTGGAAAAAGCTTGAA
genomic: CCTGCGATCACAGgtatgacagg ... aatgttgtagATGGCATCGGGTGAGGGAATTTTGACGGATGGACAGTGGAAAAAGCTTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCGATTCCTTATCTTTTCTGTCTTGGCTCGAGATCCGAGCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATTTGATTCCTGCGATCACAGgtatgacaggttagattttgttttgtatagttgtatacatacttctttgtgatgttttgtttacttaatcgaatttttggagtgttttaaggtctctcgt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctctcg