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GATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGGgtataggaatctgtaacttttttattttctgtttttctcgagtctgtgtgtcatcaaacttatctggttgttgatgtttgtgataatggaccag
species | Arabidopsis thaliana |
transcript | AT5G62000.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGG GTCAACCACGGAGGCATTTGCTACAGAGTGGGTGGAGTGTGTTTGTTAGCTEST: gi|124777909|gb|EH867852.1|EH867852
genomic: TGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGGgtataggaat ... aatggaccagGTCAACCACGGAGGCATTTGCTACAGAGTGGGTGGAGTGTGTTTGTTAGCT
EST: CAAATGAGTGGCGATTCAGACATATATTCCGGG GTCAACCACGGAGGCATTTGCTACAGAGTGGGTEST: gi|116434213|gb|EG476805.1|EG476805
genomic: CAAATGAGTGGCGATTCAGACATATATTCCGGGgtataggaat ... aatggaccagGTCAACCACGGAGGCATTTGCTACAGAGTGGGT
EST: TGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGG GTCAACCACGGAGGCATTTGCTACAGAGTGGGTGGAGTGTGTTTGTTAGCTEST: gi|116434209|gb|EG476801.1|EG476801
genomic: TGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGGgtataggaat ... aatggaccagGTCAACCACGGAGGCATTTGCTACAGAGTGGGTGGAGTGTGTTTGTTAGCT
EST: TGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGG GTCAACCACGGAGGCATTTGCTACAGAGTGGGTGGAGTGTGTTTGTTAGCTEST: gi|116407719|gb|EG450311.1|EG450311
genomic: TGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGGgtataggaat ... aatggaccagGTCAACCACGGAGGCATTTGCTACAGAGTGGGTGGAGTGTGTTTGTTAGCT
EST: TGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGG GTCAACCACGGAGGCATTTGCTACAGAGTGGGTGGAGTGTGTTTGTTAGCT
genomic: TGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGGgtataggaat ... aatggaccagGTCAACCACGGAGGCATTTGCTACAGAGTGGGTGGAGTGTGTTTGTTAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCATGCAAATGAGTGGCGATTCAGACATATATTCCGGGgtataggaatctgtaacttttttattttctgtttttctcgagtctgtgtgtcatcaaacttatctggttgttgatgtttgtgataatggaccag
- - - - - - - - - - - - - - - - - - GCAAAG