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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgttttctgatttattggtttgagtgttgtagaggtgatcttattcttcaagatgctgaattctatatattttttgttccatacagCAAGACGAGAATGCAATTGAGAAAGAAGCGCCTCTTCCTCCACCTCCGAGGTTCCAGGTGCATTCGTTCTGCAAAACCTTGACTGCATCCGACACAAGTA

Basic information

species Arabidopsis thaliana
transcript AT5G62000.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380590|gb|EG423182.1|EG423182
EST:     CAGATACAGATGAAGTTTATGCGCAGATTACTCTTCTTCCTGAGGCTAAT                         CAAGACGAGAATGCAATTGAGAAAGAAGCGCCTCTTCCTCCACCTCCGAGG
genomic: CAGATACAGATGAAGTTTATGCGCAGATTACTCTTCTTCCTGAGGCTAATgtaagttttg ... ttccatacagCAAGACGAGAATGCAATTGAGAAAGAAGCGCCTCTTCCTCCACCTCCGAGG
EST: gi|125246411|gb|EL260496.1|EL260496
EST:     GAAGTTTATGCGCAGATTACTCTTCTTCCTGAGGCTAAT                         CAAGACGAGAATGCAATTGAGAAAGAAGCG
genomic: GAAGTTTATGCGCAGATTACTCTTCTTCCTGAGGCTAATgtaagttttg ... ttccatacagCAAGACGAGAATGCAATTGAGAAAGAAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggtgatcttattcttcaagatgctgaattctatatattttttgttccatacagCAAGACGAGAATGCAATTGAGAAAGAAGCGCCTCTTCCTCCACCTCCGAGGTTCCAGGTGCATTCGTTCTGCAAAACCTTGACTGCATCCGACACAAGTA
                                      ttttttgttcc  CT-rich tract
                         tgaattctatatattt  TA-rich tract