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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgaaaaaatatatccaatatttactttcttgtcccacaagtaacctttgtcgctctgttcttatttggtttcttaaccaatatttgcagCTTGGCCTGTTAATGCTACTGGAACTGGCATCGCATCGACAGAGTTTGCTTATGGATCTGGACATGTCGACCCGATAGCCGCTTCAAATCCTGGACTTGT

Basic information

species Arabidopsis thaliana
transcript AT5G59120.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830325|gb|CK120009.1|CK120009
EST:     CAACCCTAAATGGTCTCCTTCCATGATTCAATCTGCCATCATGACAACCG                         CTTGGCCTGTTAATGCTACTGGAACTGGCATCGCATCGACAGAGTTTGCTT
genomic: CAACCCTAAATGGTCTCCTTCCATGATTCAATCTGCCATCATGACAACCGgtaagcgaaa ... atatttgcagCTTGGCCTGTTAATGCTACTGGAACTGGCATCGCATCGACAGAGTTTGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaagtaacctttgtcgctctgttcttatttggtttcttaaccaatatttgcagCTTGGCCTGTTAATGCTACTGGAACTGGCATCGCATCGACAGAGTTTGCTTATGGATCTGGACATGTCGACCCGATAGCCGCTTCAAATCCTGGACTTGT
                                    tcttaac  putative branch site (score: 2)
                       ttcttattt  TA-rich tract