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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttttgattaattcatctctctaattatggttttagttataattaaatttaaataccgttacgaagattttaatacgtgatatatattttctagTTCGATCGAAGGTCGTCTGGTGAGAAGTTACAAGAGGAGTTTCAACGGTTTTGCGGCCAGGCTCACTGAGTCGGAACGAGAAAGAGTTGCCA

Basic information

species Arabidopsis thaliana
transcript AT5G59120.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86066877|gb|DR362634.1|DR362634
EST:     ACACCAACGTCCGACCACATGAATATTCTTCAAGAGGTCACCGGAGAAAG                         TTCGATCGAAGGTCGTCTGGTGAGAAGTTACAAGAGGAGTTTCAACGGTTT
genomic: ACACCAACGTCCGACCACATGAATATTCTTCAAGAGGTCACCGGAGAAAGgtgtgttttg ... tattttctagTTCGATCGAAGGTCGTCTGGTGAGAAGTTACAAGAGGAGTTTCAACGGTTT
EST: gi|86066878|gb|DR362635.1|DR362635
EST:     ACACCAACGTCCGACCACATGAATATTCTTCAAGAGGTCACCGGAGAAAG                         TTCGATCGAAGGTCGTCCTGGTGAGAAGTTACAAGAGGAGTTTCAACGGTT
genomic: ACACCAACGTCCGACCACATGAATATTCTTCAAGAGGTCACCGGAGAAAGgtgtgttttg ... tattttctagTTCGATCGAAGGTCGTC-TGGTGAGAAGTTACAAGAGGAGTTTCAACGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattaaatttaaataccgttacgaagattttaatacgtgatatatattttctagTTCGATCGAAGGTCGTCTGGTGAGAAGTTACAAGAGGAGTTTCAACGGTTTTGCGGCCAGGCTCACTGAGTCGGAACGAGAAAGAGTTGCCA
                            ttttaat  putative branch site (score: 3)
                                             tattttct  putative PPT
                        aagattttaatacgtg  TA-rich tract