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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcccttaattcctccctgtttttccctaattaatcgactgtccctcgatcaatcattttcacatttccatctgcagGATGCAGGTTGAAGTTAGCAAATACACAGAAGGGGTAAATGATAAAGCATTGAGGCCTAATGGACTCTCCAAATCCTTGATTCGATATGATG

Basic information

species Arabidopsis thaliana
transcript AT5G58140.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125059360|gb|EL128037.1|EL128037
EST:     ACGACCAGGGCAATACCATCAAGTTCATTGG                         GATGCAGGTTGAAGTTAGCAAATACACAGAAGGGGTAAATGATAAAGCATT
genomic: ACGACCAGGGCAATACCATCAAGTTCATTGGgtacgtccct ... ccatctgcagGATGCAGGTTGAAGTTAGCAAATACACAGAAGGGGTAAATGATAAAGCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccctaattaatcgactgtccctcgatcaatcattttcacatttccatctgcagGATGCAGGTTGAAGTTAGCAAATACACAGAAGGGGTAAATGATAAAGCATTGAGGCCTAATGGACTCTCCAAATCCTTGATTCGATATGATG
      aattaat  putative branch site (score: 3)
                                          tttccatct  putative PPT
     taattaat  TA-rich tract