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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATTATATCTGCAGTTATGAGTTAATCTGATCAATCTCTGTCATCAGGTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAGgtaataataatcattgtctctgttgatctaaacattgcttatttatacattgccacatgccttgagtagtctcttcttccaataattttttagctgttgtttcggttaaagatctgtatatattttccataaacag

Basic information

species Arabidopsis thaliana
transcript AT5G58140.4
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.4 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 16
CATTATTATATCTGCAGTTATGAGTTAATCTGATCAATCTCTGTCATCAGGTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAGgtaataataatcattgtc--tctgttgatctaaacattgcttat-ttatacattgccacatgccttgagtagtctcttcttccaataattttttagctgttgtttcggttaaagatctgtatatattttccataaacag
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--------------------------------------------------GTTCTATGCTGCAGAGGTCGTGATTGGCTTGGAATATCTTCACTGTTTAGgtacttctgacgaccgagaacttgtactgttaatttttgtgagtaccataaagaatgaaagatgttacaaaattcttttttcctaaa---ctatagttgattt------------------------------------