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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttccactttaccatagcctttgagatacttctattggccagccatcttaattctctgtttttcctatgttttgttattatagGTTCAATGACTCCTCCTCCACAATCGCACCATGCTCCTTCTCCTCCCATTCCTGATTCTTTGATTTCTCCTGCTCACGCTCCAGTCTCTTTCTCTATGAA

Basic information

species Arabidopsis thaliana
transcript AT5G56890.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164184979|gb|ES097563.1|ES097563
EST:     TCACCACTGCCACCGCATCTCATATCTCCAAAGAAGTACAAACCGTAAAG                         GTTCAATGTACTCCTCCTCCACA
genomic: TCACCACTGCCACCGCATCTCATATCTCCAAAGAAGT-CAAACCGTAAAGgtttccactt ... gttattatagGTTCAATG-ACTCCTCCTCCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctattggccagccatcttaattctctgtttttcctatgttttgttattatagGTTCAATGACTCCTCCTCCACAATCGCACCATGCTCCTTCTCCTCCCATTCCTGATTCTTTGATTTCTCCTGCTCACGCTCCAGTCTCTTTCTCTATGAA
                 tcttaat  putative branch site (score: 3)
                                         ttttgtt  putative PPT
                                     tatgttttgttattat  TA-rich tract