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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgagattttttcagttgttttgggaacaaaactgtctttatgtggttcttgttttggtgtgaaaccaattgctgttattgtgtttctccagATTGTTCTTCAACTATTTGTTTGGAACCGTACACAAACACACCTCCGGGATCTCCATGTGGCTGTGTCTGGCCAATTCAAGTTGAGCTACGCCTTAGCAT

Basic information

species Arabidopsis thaliana
transcript AT5G56890.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116450970|gb|EG493562.1|EG493562
EST:     CCCTCTAGGTCCACCTCTTCAAGCATTTCCTCCTCCTCCCCCTAATTCAG                         ATTGTTCTTCAACTATTTGTTTGGAACCGTACACAAACACACCTCCGGGAT
genomic: CCCTCTAGGTCCACCTCTTCAAGCATTTCCTCCTCCTCCCCCTAATTCAGgtttgttgag ... gtttctccagATTGTTCTTCAACTATTTGTTTGGAACCGTACACAAACACACCTCCGGGAT
EST: gi|86064561|gb|DR360318.1|DR360318
EST:     CCCTCTAGGTCCACCTCTTCAAGCATTTCCTCCTCCTCCCCCTAATTCAG                         ATTGTTCTTCAACTATTTGTTTGGAACCGTACACAAACACACCTCCGGGAT
genomic: CCCTCTAGGTCCACCTCTTCAAGCATTTCCTCCTCCTCCCCCTAATTCAGgtttgttgag ... gtttctccagATTGTTCTTCAACTATTTGTTTGGAACCGTACACAAACACACCTCCGGGAT
EST: gi|116450959|gb|EG493551.1|EG493551
EST:     CCCTCTAGGTCCACCTCTTCAAGCATTTCCTCCTCCTCCCCCTAATTCAG                         ATTGTTCTTCAACTATTTGTTTGGAACCGTACACAAACACACCTCCGGGAT
genomic: CCCTCTAGGTCCACCTCTTCAAGCATTTCCTCCTCCTCCCCCTAATTCAGgtttgttgag ... gtttctccagATTGTTCTTCAACTATTTGTTTGGAACCGTACACAAACACACCTCCGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgtggttcttgttttggtgtgaaaccaattgctgttattgtgtttctccagATTGTTCTTCAACTATTTGTTTGGAACCGTACACAAACACACCTCCGGGATCTCCATGTGGCTGTGTCTGGCCAATTCAAGTTGAGCTACGCCTTAGCAT
                                            tgtttctcc  CT-rich tract
            ttgtttt  TA-rich tract