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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAGgtttgtttttcgtttcttttggagtgacagctgaatgattttagcatttgtctctatggcttttgctttcccgatttcatgtggatagtttgcttacag

Basic information

species Arabidopsis thaliana
transcript AT5G56180.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G56180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G12490.2 (Glycine max), 5'ss of exon 4
GAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAGgt-ttgt---ttttcgtttcttttggagtgacagctgaatgattttagc-atttgtctctatggcttttgctttcccgatttcatgtggatagtttgcttacag
||||||||||| ||||||||||| || ||| |||| |||| ||| || |||||||| ||||  | ||||| ||||    ||  | ||||       ||   | |||||| ||  | | |  | |   ||    |||   |      | | | | | | |   |||  |    
GAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGgtattgtgccattctgattctcccttcttgttgggtgaatggttacaactaactcttgataatcatttaagtgaattcaatccttattggtgtcttgtgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124861488|gb|EH945925.1|EH945925
EST:     TCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAG                         GATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGG
genomic: TCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAGgtttgttttt ... ttgcttacagGATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGG