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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttttcgtttcttttggagtgacagctgaatgattttagcatttgtctctatggcttttgctttcccgatttcatgtggatagtttgcttacagGATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGGTATCACTACCTCTCTGCCATTTTGATG

Basic information

species Arabidopsis thaliana
transcript AT5G56180.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124861488|gb|EH945925.1|EH945925
EST:     TCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAG                         GATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGG
genomic: TCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAGgtttgttttt ... ttgcttacagGATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgtctctatggcttttgctttcccgatttcatgtggatagtttgcttacagGATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGGTATCACTACCTCTCTGCCATTTTGATG
                                            tttgctt  CT-rich tract
                             atttcat  TA-rich tract